HUMAN PROTEINPEDIA 
 

Public data contributed to Human Proteinpedia can be downloaded here


  Human Proteinpedia
Accession Number
Description Journal Name Annotation Category Experimental Platform Download Data Contributing Group
(Principal Investigator)
1. HuPA_00001 Brain proteome analysis  Tissue expression: Brain
 Mass spectrometry Download
Dr. Michael Dunn
2. HuPA_00002 Plasma proteome analysis  Unpublished Tissue expression: Blood plasma
 Mass spectrometry Download
Dr. William Hancock
3. HuPA_00003 B Cell proteome analysis  Tissue expression: B Cell
 Mass spectrometry Download
Dr. David Muddiman
4. HuPA_00004 Saliva proteome analysis  Unpublished Tissue expression: Saliva
 Mass spectrometry Download
Dr. Keiryn Bennett
5. HuPA_00005 Plasma proteome analysis  Unpublished Tissue expression: Blood plasma
 Mass spectrometry Download
Dr. William Hancock
6. HuPA_00006 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Guy Poirier
7. HuPA_00007 Platelet subproteome analysis  Unpublished Tissue expression: Platelet
Subcellular localization
 Mass spectrometry Download
Dr. Gerard Cagney
8. HuPA_00008 Serum proteome analysis  Tissue expression: Serum
 Mass spectrometry Download
Dr. Richard Smith
9. HuPA_00009 Serum proteome analysis  Tissue expression: Serum
 Mass spectrometry Download
Dr. Jenny Van Eyk
10. HuPA_00010 PARK7 brain expression analysis  Unpublished Tissue expression: Brain
 Western blotting Download
Dr. Ravi Sirdeshmukh
11. HuPA_00012 Her2/neu tyrosine phosphoproteome anlaysis  Cell line expression: NIH3T3
Post-translational modifications
 Mass spectrometry Download
Dr. Philip Cole
12. HuPA_00013 Organellar proteomic analysis  Subcellular localization
 Fusion proteins for
subcellular localization
Download
Dr. Ragna Rönnholm
13. HuPA_00015 HeLa phosphoproteome anlaysis  Cell line expression: HeLa
Post-translational modifications
 Mass spectrometry Download
Dr. Matthias Mann
14. HuPA_00016 TNF phosphoproteome anlaysis  Cell line expression: HeLa
Post-translational modifications
 Mass spectrometry Download
Dr. John Yates, III
15. HuPA_00017 Bile duct analysis  Unpublished Tissue expression: Bile duct
 Western blotting Download
Dr. Akhilesh Pandey
16. HuPA_00018 Hair shaft proteome analysis  Tissue expression: Hair
Post-translational modifications
 Mass spectrometry Download
Dr. Robert Rice
17. HuPA_00019 Sulfation analysis  Unpublished Cell line expression:
Post-translational modifications
 Mass spectrometry Download
Dr. Mark McComb
18. HuPA_00020 Hepatocellular carcinoma analysis  Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
19. HuPA_00021 Urine phosphoproteome analysis  Unpublished Tissue expression: Urine
Post-translational modifications
 Mass spectrometry Download
Dr. Young-Ki Paik
20. HuPA_00022 Lung proteome analysis  Unpublished Tissue expression: Lung
 Mass spectrometry Download
Dr. Thomas Neubert
21. HuPA_00024 GFP fusion analysis  Subcellular localization
 Fusion proteins for
subcellular localization
Download
Dr. Osamu Ohara
22. HuPA_00026 B Cell proteome analysis  Tissue expression: B Cell
 Mass spectrometry Download
Dr. Mauno Vihinen
23. HuPA_00028 Histone modification analysis  Unpublished Cell line expression: 293 HEK
Post-translational modifications
 Mass spectrometry Download
Dr. Alma Burlingame
24. HuPA_00029 Casein kinase II experiments using peptide microarray  Unpublished Enzyme substrates
Post-translational modifications
 Protein/peptide microarray Download
Dr. Akhilesh Pandey
25. HuPA_00030 Histone modifications analysis  Cell line expression: SCLC OC-NYH
Post-translational modifications
 Mass spectrometry Download
Dr. Ole Jensen
26. HuPA_00031 Phosphoproteome analysis  Unpublished Tissue expression: Mesenchymal cell
Post-translational modifications
 Mass spectrometry Download
Dr. Blagoy Blagoev
27. HuPA_00032 Pancreatic cancer analysis  Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
28. HuPA_00033 Brain proteome analysis  Unpublished Tissue expression: Brain
 Mass spectrometry Download
Dr. Brian Balgley
29. HuPA_00034 Acetylation analysis  Unpublished Cell line expression:
Post-translational modifications
 Mass spectrometry Download
Dr. Catherine Fenselau
30. HuPA_00035 Human Protein Atlas Project  Tissue expression:
 Immunohistochemistry Download
Dr. Mathias Uhlen
31. HuPA_00036 Ovary proteome analysis  Unpublished Tissue expression: Ovary
 Mass spectrometry Download
Dr. Brian Balgley
32. HuPA_00037 Adipose derived stem cell analysis  Tissue expression: Stem cell
 Mass spectrometry Download
Dr. Jeffrey Gimble
33. HuPA_00038 Bone marrow stromal cell proteome analysis  Tissue expression: Bone marrow
 Mass spectrometry Download
Dr. Beerelli Seshi
34. HuPA_00041 Saliva proteome analysis  Tissue expression: Saliva
 Mass spectrometry Download
Dr. Eric Dransfield
35. HuPA_00042 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Akhilesh Pandey
36. HuPA_00044 Liver normal and tumor tissue analysis  Unpublished Tissue expression: Liver
 Mass spectrometry Download
Dr. Akhilesh Pandey
37. HuPA_00045 Liver normal and tumor tissue analysis  Unpublished Tissue expression: Liver
 Mass spectrometry Download
Dr. Akhilesh Pandey
38. HuPA_00046 Organellar proteomic analysis  Subcellular localization
 Fusion proteins for
subcellular localization
Download
Dr. Ragna Rönnholm
39. HuPA_00047 Glycosylation analysis  Tissue expression: Saliva
 Mass spectrometry Download
Dr. Joseph Loo
40. HuPA_00048 Platelet acetylation analysis  Tissue expression: Platelet
Post-translational modifications
 Mass spectrometry Download
Dr. Kris Gevaert
41. HuPA_00050 Organellar proteomic analysis  Subcellular localization
 Fusion proteins for
subcellular localization
Download
Dr. Ragna Rönnholm
42. HuPA_00051 Acetylation analysis  Unpublished Cell line expression:
Post-translational modifications
 Mass spectrometry Download
Dr. Sumio Sugano
43. HuPA_00052 Enrichment and Identification of Cationic Urinary Proteins  Unpublished Tissue expression: Urine
 Mass spectrometry Download
Dr. Visith Thongboonkerd
44. HuPA_00053 Urinary proteome analysis  Unpublished Tissue expression: Urine
 Mass spectrometry Download
Dr. Visith Thongboonkerd
45. HuPA_00054 Brain proteome analysis  Unpublished Tissue expression: Brain
 Mass spectrometry Download
Dr. K.W. Michael Siu
46. HuPA_00056 Ubiquitination analysis  Cell line expression: H1299
Post-translational modifications
 Mass spectrometry Download
Dr. Daniel Figeys
47. HuPA_00058 Sperm proteome analysis  Tissue expression: Spermatozoa
 Mass spectrometry Download
Dr. Rafael Oliva
48. HuPA_00059 Pancreas tissue analysis  Unpublished Tissue expression: Pancreas
 Mass spectrometry Download
Dr. Akhilesh Pandey
49. HuPA_00060
to
HuPA_00134
HUPO Liver Proteome Project    Tissue expression: Liver
 Mass spectrometry Download
Dr. Fuchu He
50. HuPA_00135 Pancreatic juice analysis  Tissue expression: Pancreatic juice
 Mass spectrometry Download
Dr. Akhilesh Pandey
51. HuPA_00136 Pancreatic juice analysis  Tissue expression: Pancreatic juice
 Mass spectrometry Download
Dr. Akhilesh Pandey
52. HuPA_00137 Urine ultrafiltrate analysis  Unpublished Tissue expression: Urine
Post-translational modifications
 Mass spectrometry Download
Dr. Harald Mischak
53. HuPA_00138 Cerebrospinal fluid analysis  Tissue expression: Cerebrospinal fluid
 Mass spectrometry Download
Dr. Jean-Charles Sanchez
54. HuPA_00139
to
HuPA_00143
Immunohistochemical staining for NKX3.1  Tissue expression: Prostate
Prostate atrophy
Prostate prostatic intraepithelial neoplasia
Prostate carcinoma
Prostate benign prostatic hyperplasia
 Immunohistochemistry Download
Dr. Angelo DeMarzo
55. HuPA_00144 Large-scale mapping of protein-protein interactions by mass spectrometry  Protein-protein interaction
 Mass spectrometry Download
Dr. Daniel Figeys
56. HuPA_00145 LIFEdb - GFP fusion analysis  Subcellular localization
 Fusion proteins for
subcellular localization
Download
Dr. Stefan Wiemann
57. HuPA_00150 Jurkat cells analysis  Cell line expression: Jurkat
Post-translational modifications
 Mass spectrometry Download
Dr. Kris Gevaert
58. HuPA_00151 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Xose Bustelo
59. HuPA_00152 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Xose Bustelo
60. HuPA_00153 GST Pull down based
protein-protein interaction analysis 
Protein-protein interaction
 GST Pull down Download
Dr. Xose Bustelo
61. HuPA_00154 GST Pull down based
protein-protein interaction analysis 
Protein-protein interaction
 GST Pull down Download
Dr. Xose Bustelo
62. HuPA_00155 GST Pull down based
protein-protein interaction analysis 
Protein-protein interaction
 GST Pull down Download
Dr. Xose Bustelo
63. HuPA_00156 GST Pull down based
protein-protein interaction analysis 
Protein-protein interaction
 GST Pull down Download
Dr. Xose Bustelo
64. HuPA_00157
to
HuPA_00358
HUPO Liver Proteome Project    Tissue expression: Liver
 Mass spectrometry Download
Dr. Fuchu He
65. HuPA_00359 Tandem Affinity Purification based protein-protein interaction analysis  Protein-protein interaction
 Tandem Affinity Purification Download
Dr. Heiko Hermeking
66. HuPA_00360 Tandem Affinity Purification based protein-protein interaction analysis  Protein-protein interaction
 Tandem Affinity Purification Download
Dr. Heiko Hermeking
67. HuPA_00361 Ovarian tumor proteome analysis  Disease tissue expression
 Mass spectrometry Download
Dr. Peter James
68. HuPA_00363
to
HuPA_00376
HUPO Plasma Proteome Project  Tissue expression: Blood Plasma
 Mass spectrometry Download
HUPO Plasma
Proteome Consortium
69. HuPA_00377 Pancreatic cancer analysis  Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
70. HuPA_00378 Liver cancer analysis  Unpublished Disease tissue expression
 Western blotting Download
Dr. Akhilesh Pandey
71. HuPA_00379 HeLa cell fractionization  Unpublished Cell line expression: HeLa
 Mass spectrometry Download
Dr. David Horn
72. HuPA_00380 Identification of NPM-ALK interacting proteins by tandem mass spectrometry  Cell line expression: Karpas 299
 Mass spectrometry Download
Dr. Kojo Elenitoba-Johnson
73. HuPA_00381 Identification of NPM-ALK interacting proteins by tandem mass spectrometry  Cell line expression: Karpas 299
 Mass spectrometry Download
Dr. Kojo Elenitoba-Johnson
74. HuPA_00382 Human erythroleukemia K562 analysis  Cell line expression: K562
 Mass spectrometry Download
Dr. Natalie Ahn
75. HuPA_00383 Human erythroleukemia K562 analysis  Cell line expression: K562
 Mass spectrometry Download
Dr. Natalie Ahn
76. HuPA_00384 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. M Angel Piris
77. HuPA_00388
to
HuPA_00399
293T phosphoproteome analysis  Cell line expression: 293T
Post-translational modifications
 Mass spectrometry Download
Dr. Akhilesh Pandey
78. HuPA_00400
to
HuPA_00580
Cellzome_Abl_inhibitors_NatureBiotechnology  Cell line expression: HeLa, Jurkat, K-562, Placenta, Ramos
 Mass spectrometry Download
Dr. Bernhard Kuster
79. HuPA_00595 Co-immunoprecipitation based
protein-protein interaction analysis 
Unpublished Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Paola Marignani
80. HuPA_00634 Co-immunoprecipitation based
protein-protein interaction analysis 
Unpublished Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Thomas george
81. HuPA_00635 Co-immunoprecipitation based
protein-protein interaction analysis 
Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Gyorgy Szabadkai
82. HuPA_00636 Liver cancer analysis  Unpublished Disease tissue expression
 Western blotting Download
Dr. Akhilesh Pandey
83. HuPA_00638   Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Narendra Kumar
84. HuPA_00639   Enzyme substrates
Post-translational modifications
 Kinase assay Download
Narendra Kumar
85. HuPA_00641 Proteomic characterization of human embryonic stem cell and embryonal carcinoma cells  Unpublished Cell line expression: Human embryonic stem cells (H1 Wi cell) and human embryonal cancer cells
 Mass spectrometry Download
Dr. Akhilesh Pandey
86. HuPA_00642   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
87. HuPA_00643   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
88. HuPA_00644   Unpublished Tissue expression: Oesophagus
 Immunohistochemistry Download
Dr. Akhilesh Pandey
89. HuPA_00645   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
90. HuPA_00646   Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Dr. Paola Marignani
91. HuPA_00647   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
92. HuPA_00648   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
93. HuPA_00649   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
94. HuPA_00650   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
95. HuPA_00651   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
96. HuPA_00652   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
97. HuPA_00653   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
98. HuPA_00654   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
99. HuPA_00655   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
100. HuPA_00656   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
101. HuPA_00657   Unpublished Tissue expression: Oesophagus epithelium
 Immunohistochemistry Download
Dr. Akhilesh Pandey
102. HuPA_00660 Skeletal muscle tissue proteome analysis  Unpublished Tissue Expression
 Mass spectrometry Download
Dr. Cecilia Gelfi
103. HuPA_00661 Immature Dendritic cell proteome analysis  Tissue expression: Immature Dendritic cell
 Mass spectrometry Download
Dr. Edwin Lasonder
104. HuPA_00662 Mature Dendritic cell proteome analysis  Tissue expression: Mature Dendritic cell
 Mass spectrometry Download
Dr. Edwin Lasonder
105. HuPA_00663 An Evaluation of several MS/MS search Algorithms for analysis of spectra derived from ETD experiments  Cell line Expression
 Mass spectrometry Download
Dr. Akhilesh Pandey
106. HuPA_00664 An Evaluation of several MS/MS search Algorithms for analysis of spectra derived from ETD experiments  Cell line Expression
 Mass spectrometry Download
Dr. Akhilesh Pandey
107. HuPA_00665 An Evaluation of several MS/MS search Algorithms for analysis of spectra derived from ETD experiments  Cell line Expression
 Mass spectrometry Download
Dr. Akhilesh Pandey
108. HuPA_00666 An Evaluation of several MS/MS search Algorithms for analysis of spectra derived from ETD experiments  Cell line Expression
 Mass spectrometry Download
Dr. Akhilesh Pandey
109. HuPA_00667   Unpublished Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Huiying Zhao
110. HuPA_00668 Urine ultrafiltrate analysis  Unpublished Tissue expression: Urine
 Mass spectrometry Download
Prof. Harald Mischak
111. HuPA_00670 Urine ultrafiltrate analysis  Tissue expression: Urine
 Mass spectrometry Download
Prof. Harald Mischak
112. HuPA_00671 Proteomic characterization of human embryonic stem cell differentiation into oligodendrocytes  Unpublished Cell line expression: Human embryonic stem cells (H1 Wi cell)
 Mass spectrometry Download
Dr. Akhilesh Pandey
113. HuPA_00672 Profiling of urinary proteome  Tissue expression: Urine
 Mass spectrometry Download
Akhilesh Pandey
114. HuPA_00673 Quantitative tissue proteomics of Esophageal Squamous Cell Carcinoma  Tissue expression: Esophagous
 Mass spectrometry Download
Akhilesh Pandey
115. HuPA_00674 Proteomics profiling of human bile  Unpublished Tissue expression: Bile
 Mass spectrometry Download
Dr. Akhilesh Pandey
116. HuPA_00682 Proteomic profiling of human normal vitreous humour  Unpublished Tissue expression: Vitreous humor
 Mass spectrometry Download
Dr. Akhilesh Pandey
117. HuPA_00685 None  Unpublished Tissue expression: Breast
 Immunohistochemistry Download
Dr. Akhilesh Pandey
118. HuPA_00686   Unpublished Disease tissue expression
 Immunohistochemistry Download
Dr. Akhilesh Pandey
119. HuPA_00689   Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Mindaugas Valius
120. HuPA_00690   Protein-protein interaction
 Co-immunoprecipitation based
protein-protein interaction
Download
Mindaugas Valius
121. HuPA_00691 Analysis of urine proteome via a combination of multidimensional approaches  Unpublished Tissue expression: Urine
 Mass spectrometry Download
Antonia Vlahou
122. HuPA_00692 Discovery of biomarkers for aggressive Bladder Cancer  Unpublished Tissue expression: Urine
 Mass spectrometry Download
Antonia Vlahou
123. HuPA_00696 SILAC-based quantitative proteomic analysis of gastric cancer secretome  Unpublished Cell line expression: AGS, KatoIII, NCI-N87, SNU-1, SNU-5 , SNU-16 and HFE-145
 Mass spectrometry Download
Akhilesh Pandey
124. HuPA_00697 Quantitative proteomic approach identifies calcium calmodulin dependent kinase kinase 2 as potential biomarker of gastric adenocarcinoma  Unpublished Tissue expression: Stomach
 Mass spectrometry Download
Akhilesh Pandey
125. HuPA_00698 Proteomic analysis of osteoarthritis synovial fluid   Unpublished Tissue expression: Synovial fluid
 Mass spectrometry Download
Akhilesh Pandey
126. HuPA_00699 Quantitative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy  Unpublished Tissue Expression
 Mass spectrometry Download
Akhilesh Pandey
127. HuPA_00700 Protein expression profiling of normal human placenta using two-dimensional gel electrophoresis  Unpublished Tissue Expression
 Mass spectrometry Download
Ravi Sirdeshmukh
128. HuPA_00701 Quantitative proteomic analysis of Head and neck squamous cell (HNSCC) cancer secretome  Unpublished Cell line expression: O11, O22, O28, O29, CAL27, Fadu and OKF6/TERT1
 Mass spectrometry Download
Aditi Chatterjee
129. HuPA_00702 Quantitative proteomic profiling of rheumatoid arthritis and osteoarthritis synovial fluid  Unpublished Tissue expression: Synovial fluid
 Mass spectrometry Download
Akhilesh Pandey
130. HuPA_00703 Proteins with altered levels in serum from acute ischemic stroke patients as revealed by iTRAQ-based differential/quantitative proteomic analysis  Unpublished Tissue Expression
 Mass spectrometry Download
Rita Christopher
131. HuPA_00709 Analysis of urine low MW proteome (peptidome)  Unpublished Tissue expression: Urine
 Massspectrometry Download
Antonia Vlahou
132. HuPA_00851 Quantitative proteomic analysis of cryptococcal meningitis  Unpublished Tissue expression: Human brain tissues
 Mass spectrometry Download
Dr. Keshava Prasad
133. HuPA_00852 Synovial fluid proteome of rheumatoid arthritis  Unpublished Tissue expression: Synovial fluid
 Mass spectrometry Download
Akhilesh Pandey


Please send any questions or comments about Human Proteinpedia to help
This is a joint project between:
   and